BAC-derived markers converted from RFLP linked to Phytophthora capsici resistance in pepper (Capsicum annuum L.).
Identifieur interne : 001D45 ( Main/Exploration ); précédent : 001D44; suivant : 001D46BAC-derived markers converted from RFLP linked to Phytophthora capsici resistance in pepper (Capsicum annuum L.).
Auteurs : Hyoun-Joung Kim [Corée du Sud] ; Seok-Hyeon Nahm ; Heung-Ryul Lee ; Gi-Bo Yoon ; Ki-Taek Kim ; Byoung-Cheorl Kang ; Doil Choi ; Oh Yeol Kweon ; Myeong-Cheoul Cho ; Jin-Kyung Kwon ; Jung-Heon Han ; Jeong-Ho Kim ; Minkyu Park ; Jong Hwa Ahn ; Soon Ho Choi ; Nam Han Her ; Joo-Hee Sung ; Byung-Dong KimSource :
- TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik [ 0040-5752 ] ; 2008.
Descripteurs français
- KwdFr :
- ADN des plantes (génétique), Capsicum (génétique), Capsicum (microbiologie), Cartographie chromosomique (MeSH), Chromosomes artificiels de bactérie (MeSH), Chromosomes de plante (MeSH), Génome végétal (MeSH), Immunité innée (MeSH), Locus de caractère quantitatif (MeSH), Maladies des plantes (génétique), Maladies des plantes (microbiologie), Marqueurs génétiques (MeSH), Phytophthora (pathogénicité), Polymorphisme de nucléotide simple (MeSH), Polymorphisme de restriction (MeSH).
- MESH :
- génétique : ADN des plantes, Capsicum, Maladies des plantes.
- microbiologie : Capsicum, Maladies des plantes.
- pathogénicité : Phytophthora.
- Cartographie chromosomique, Chromosomes artificiels de bactérie, Chromosomes de plante, Génome végétal, Immunité innée, Locus de caractère quantitatif, Marqueurs génétiques, Polymorphisme de nucléotide simple, Polymorphisme de restriction.
English descriptors
- KwdEn :
- Capsicum (genetics), Capsicum (microbiology), Chromosome Mapping (MeSH), Chromosomes, Artificial, Bacterial (MeSH), Chromosomes, Plant (MeSH), DNA, Plant (genetics), Genetic Markers (MeSH), Genome, Plant (MeSH), Immunity, Innate (MeSH), Phytophthora (pathogenicity), Plant Diseases (genetics), Plant Diseases (microbiology), Polymorphism, Restriction Fragment Length (MeSH), Polymorphism, Single Nucleotide (MeSH), Quantitative Trait Loci (MeSH).
- MESH :
- chemical , genetics : DNA, Plant.
- genetics : Capsicum, Plant Diseases.
- microbiology : Capsicum, Plant Diseases.
- pathogenicity : Phytophthora.
- Chromosome Mapping, Chromosomes, Artificial, Bacterial, Chromosomes, Plant, Genetic Markers, Genome, Plant, Immunity, Innate, Polymorphism, Restriction Fragment Length, Polymorphism, Single Nucleotide, Quantitative Trait Loci.
Abstract
Phytophthora capsici Leonian, an oomycete pathogen, is a serious problem in pepper worldwide. Its resistance in pepper is controlled by quantitative trait loci (QTL). To detect QTL associated with P. capsici resistance, a molecular linkage map was constructed using 100 F(2) individuals from a cross between Capsicum annuum 'CM334' and C. annuum 'Chilsungcho'. This linkage map consisted of 202 restriction fragment length polymorphisms (RFLPs), 6 WRKYs and 1 simple sequence repeat (SSR) covering 1482.3 cM, with an average interval marker distance of 7.09 cM. QTL mapping of Phytophthora root rot and damping-off resistance was performed in F(2:3) originated from a cross between resistant Mexican landrace C. annuum 'CM334' and susceptible Korean landrace C. annuum 'Chilsungcho' using composite interval mapping (CIM) analysis. Four QTL explained 66.3% of the total phenotypic variations for root rot resistance and three 44.9% for damping-off resistance. Of these QTL loci, two were located close to RFLP markers CDI25 on chromosome 5 (P5) and CT211A on P9. A bacterial artificial chromosome (BAC) library from C. annuum 'CM334' was screened with these two RFLP probes to obtain sequence information around the RFLP marker loci for development of PCR-based markers. CDI25 and CT211 probes identified seven and eight BAC clones, respectively. Nine positive BAC clones containing probe regions were sequenced and used for cytogenetic analysis. One single-nucleotide amplified polymorphism (SNAP) for the CDI25 locus, and two SSRs and cleaved amplified polymorphic sequence (CAPS) for CT211 were developed using sequences of the positive BAC clones. These markers will be valuable for rapid selection of genotypes and map-based cloning for resistance genes against P. capsici.
DOI: 10.1007/s00122-008-0873-5
PubMed: 18795251
Affiliations:
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Le document en format XML
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sort="Park, Minkyu" uniqKey="Park M" first="Minkyu" last="Park">Minkyu Park</name></author><author><name sortKey="Ahn, Jong Hwa" sort="Ahn, Jong Hwa" uniqKey="Ahn J" first="Jong Hwa" last="Ahn">Jong Hwa Ahn</name></author><author><name sortKey="Choi, Soon Ho" sort="Choi, Soon Ho" uniqKey="Choi S" first="Soon Ho" last="Choi">Soon Ho Choi</name></author><author><name sortKey="Her, Nam Han" sort="Her, Nam Han" uniqKey="Her N" first="Nam Han" last="Her">Nam Han Her</name></author><author><name sortKey="Sung, Joo Hee" sort="Sung, Joo Hee" uniqKey="Sung J" first="Joo-Hee" last="Sung">Joo-Hee Sung</name></author><author><name sortKey="Kim, Byung Dong" sort="Kim, Byung Dong" uniqKey="Kim B" first="Byung-Dong" last="Kim">Byung-Dong Kim</name></author></analytic><series><title level="j">TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik</title><idno type="ISSN">0040-5752</idno><imprint><date when="2008" type="published">2008</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Capsicum (genetics)</term><term>Capsicum (microbiology)</term><term>Chromosome Mapping (MeSH)</term><term>Chromosomes, Artificial, Bacterial (MeSH)</term><term>Chromosomes, Plant (MeSH)</term><term>DNA, Plant (genetics)</term><term>Genetic Markers (MeSH)</term><term>Genome, Plant (MeSH)</term><term>Immunity, Innate (MeSH)</term><term>Phytophthora (pathogenicity)</term><term>Plant Diseases (genetics)</term><term>Plant Diseases (microbiology)</term><term>Polymorphism, Restriction Fragment Length (MeSH)</term><term>Polymorphism, Single Nucleotide (MeSH)</term><term>Quantitative Trait Loci (MeSH)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>ADN des plantes (génétique)</term><term>Capsicum (génétique)</term><term>Capsicum (microbiologie)</term><term>Cartographie chromosomique (MeSH)</term><term>Chromosomes artificiels de bactérie (MeSH)</term><term>Chromosomes de plante (MeSH)</term><term>Génome végétal (MeSH)</term><term>Immunité innée (MeSH)</term><term>Locus de caractère quantitatif (MeSH)</term><term>Maladies des plantes (génétique)</term><term>Maladies des plantes (microbiologie)</term><term>Marqueurs génétiques (MeSH)</term><term>Phytophthora (pathogénicité)</term><term>Polymorphisme de nucléotide simple (MeSH)</term><term>Polymorphisme de restriction (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>DNA, Plant</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Capsicum</term><term>Plant Diseases</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>ADN des plantes</term><term>Capsicum</term><term>Maladies des plantes</term></keywords><keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Capsicum</term><term>Maladies des plantes</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Capsicum</term><term>Plant Diseases</term></keywords><keywords scheme="MESH" qualifier="pathogenicity" xml:lang="en"><term>Phytophthora</term></keywords><keywords scheme="MESH" qualifier="pathogénicité" xml:lang="fr"><term>Phytophthora</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Chromosome Mapping</term><term>Chromosomes, Artificial, Bacterial</term><term>Chromosomes, Plant</term><term>Genetic Markers</term><term>Genome, Plant</term><term>Immunity, Innate</term><term>Polymorphism, Restriction Fragment Length</term><term>Polymorphism, Single Nucleotide</term><term>Quantitative Trait Loci</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Cartographie chromosomique</term><term>Chromosomes artificiels de bactérie</term><term>Chromosomes de plante</term><term>Génome végétal</term><term>Immunité innée</term><term>Locus de caractère quantitatif</term><term>Marqueurs génétiques</term><term>Polymorphisme de nucléotide simple</term><term>Polymorphisme de restriction</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Phytophthora capsici Leonian, an oomycete pathogen, is a serious problem in pepper worldwide. Its resistance in pepper is controlled by quantitative trait loci (QTL). To detect QTL associated with P. capsici resistance, a molecular linkage map was constructed using 100 F(2) individuals from a cross between Capsicum annuum 'CM334' and C. annuum 'Chilsungcho'. This linkage map consisted of 202 restriction fragment length polymorphisms (RFLPs), 6 WRKYs and 1 simple sequence repeat (SSR) covering 1482.3 cM, with an average interval marker distance of 7.09 cM. QTL mapping of Phytophthora root rot and damping-off resistance was performed in F(2:3) originated from a cross between resistant Mexican landrace C. annuum 'CM334' and susceptible Korean landrace C. annuum 'Chilsungcho' using composite interval mapping (CIM) analysis. Four QTL explained 66.3% of the total phenotypic variations for root rot resistance and three 44.9% for damping-off resistance. Of these QTL loci, two were located close to RFLP markers CDI25 on chromosome 5 (P5) and CT211A on P9. A bacterial artificial chromosome (BAC) library from C. annuum 'CM334' was screened with these two RFLP probes to obtain sequence information around the RFLP marker loci for development of PCR-based markers. CDI25 and CT211 probes identified seven and eight BAC clones, respectively. Nine positive BAC clones containing probe regions were sequenced and used for cytogenetic analysis. One single-nucleotide amplified polymorphism (SNAP) for the CDI25 locus, and two SSRs and cleaved amplified polymorphic sequence (CAPS) for CT211 were developed using sequences of the positive BAC clones. These markers will be valuable for rapid selection of genotypes and map-based cloning for resistance genes against P. capsici.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">18795251</PMID><DateCompleted><Year>2009</Year><Month>03</Month><Day>03</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Print">0040-5752</ISSN><JournalIssue CitedMedium="Print"><Volume>118</Volume><Issue>1</Issue><PubDate><Year>2008</Year><Month>Dec</Month></PubDate></JournalIssue><Title>TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik</Title><ISOAbbreviation>Theor Appl Genet</ISOAbbreviation></Journal><ArticleTitle>BAC-derived markers converted from RFLP linked to Phytophthora capsici resistance in pepper (Capsicum annuum L.).</ArticleTitle><Pagination><MedlinePgn>15-27</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1007/s00122-008-0873-5</ELocationID><Abstract><AbstractText>Phytophthora capsici Leonian, an oomycete pathogen, is a serious problem in pepper worldwide. Its resistance in pepper is controlled by quantitative trait loci (QTL). To detect QTL associated with P. capsici resistance, a molecular linkage map was constructed using 100 F(2) individuals from a cross between Capsicum annuum 'CM334' and C. annuum 'Chilsungcho'. This linkage map consisted of 202 restriction fragment length polymorphisms (RFLPs), 6 WRKYs and 1 simple sequence repeat (SSR) covering 1482.3 cM, with an average interval marker distance of 7.09 cM. QTL mapping of Phytophthora root rot and damping-off resistance was performed in F(2:3) originated from a cross between resistant Mexican landrace C. annuum 'CM334' and susceptible Korean landrace C. annuum 'Chilsungcho' using composite interval mapping (CIM) analysis. Four QTL explained 66.3% of the total phenotypic variations for root rot resistance and three 44.9% for damping-off resistance. Of these QTL loci, two were located close to RFLP markers CDI25 on chromosome 5 (P5) and CT211A on P9. A bacterial artificial chromosome (BAC) library from C. annuum 'CM334' was screened with these two RFLP probes to obtain sequence information around the RFLP marker loci for development of PCR-based markers. CDI25 and CT211 probes identified seven and eight BAC clones, respectively. Nine positive BAC clones containing probe regions were sequenced and used for cytogenetic analysis. One single-nucleotide amplified polymorphism (SNAP) for the CDI25 locus, and two SSRs and cleaved amplified polymorphic sequence (CAPS) for CT211 were developed using sequences of the positive BAC clones. These markers will be valuable for rapid selection of genotypes and map-based cloning for resistance genes against P. capsici.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Kim</LastName><ForeName>Hyoun-Joung</ForeName><Initials>HJ</Initials><AffiliationInfo><Affiliation>Department of Plant Science, Seoul National University, Seoul, 151-921, South Korea.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Nahm</LastName><ForeName>Seok-Hyeon</ForeName><Initials>SH</Initials></Author><Author ValidYN="Y"><LastName>Lee</LastName><ForeName>Heung-Ryul</ForeName><Initials>HR</Initials></Author><Author ValidYN="Y"><LastName>Yoon</LastName><ForeName>Gi-Bo</ForeName><Initials>GB</Initials></Author><Author ValidYN="Y"><LastName>Kim</LastName><ForeName>Ki-Taek</ForeName><Initials>KT</Initials></Author><Author ValidYN="Y"><LastName>Kang</LastName><ForeName>Byoung-Cheorl</ForeName><Initials>BC</Initials></Author><Author ValidYN="Y"><LastName>Choi</LastName><ForeName>Doil</ForeName><Initials>D</Initials></Author><Author ValidYN="Y"><LastName>Kweon</LastName><ForeName>Oh Yeol</ForeName><Initials>OY</Initials></Author><Author ValidYN="Y"><LastName>Cho</LastName><ForeName>Myeong-Cheoul</ForeName><Initials>MC</Initials></Author><Author ValidYN="Y"><LastName>Kwon</LastName><ForeName>Jin-Kyung</ForeName><Initials>JK</Initials></Author><Author ValidYN="Y"><LastName>Han</LastName><ForeName>Jung-Heon</ForeName><Initials>JH</Initials></Author><Author ValidYN="Y"><LastName>Kim</LastName><ForeName>Jeong-Ho</ForeName><Initials>JH</Initials></Author><Author ValidYN="Y"><LastName>Park</LastName><ForeName>Minkyu</ForeName><Initials>M</Initials></Author><Author ValidYN="Y"><LastName>Ahn</LastName><ForeName>Jong Hwa</ForeName><Initials>JH</Initials></Author><Author ValidYN="Y"><LastName>Choi</LastName><ForeName>Soon Ho</ForeName><Initials>SH</Initials></Author><Author ValidYN="Y"><LastName>Her</LastName><ForeName>Nam Han</ForeName><Initials>NH</Initials></Author><Author ValidYN="Y"><LastName>Sung</LastName><ForeName>Joo-Hee</ForeName><Initials>JH</Initials></Author><Author ValidYN="Y"><LastName>Kim</LastName><ForeName>Byung-Dong</ForeName><Initials>BD</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2008</Year><Month>09</Month><Day>16</Day></ArticleDate></Article><MedlineJournalInfo><Country>Germany</Country><MedlineTA>Theor Appl Genet</MedlineTA><NlmUniqueID>0145600</NlmUniqueID><ISSNLinking>0040-5752</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D018744">DNA, Plant</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D005819">Genetic Markers</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D002212" MajorTopicYN="N">Capsicum</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D002874" MajorTopicYN="Y">Chromosome Mapping</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D022202" MajorTopicYN="N">Chromosomes, Artificial, Bacterial</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D032461" MajorTopicYN="N">Chromosomes, Plant</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D018744" MajorTopicYN="N">DNA, Plant</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D005819" MajorTopicYN="N">Genetic Markers</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D018745" MajorTopicYN="N">Genome, Plant</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D007113" MajorTopicYN="N">Immunity, Innate</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010838" MajorTopicYN="N">Phytophthora</DescriptorName><QualifierName UI="Q000472" MajorTopicYN="N">pathogenicity</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010935" MajorTopicYN="N">Plant Diseases</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D012150" MajorTopicYN="Y">Polymorphism, Restriction Fragment Length</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D020641" MajorTopicYN="N">Polymorphism, Single Nucleotide</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D040641" MajorTopicYN="Y">Quantitative Trait Loci</DescriptorName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2008</Year><Month>02</Month><Day>22</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2008</Year><Month>08</Month><Day>15</Day></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2008</Year><Month>9</Month><Day>17</Day><Hour>9</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2009</Year><Month>3</Month><Day>4</Day><Hour>9</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2008</Year><Month>9</Month><Day>17</Day><Hour>9</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">18795251</ArticleId><ArticleId IdType="doi">10.1007/s00122-008-0873-5</ArticleId></ArticleIdList><ReferenceList><Reference><Citation>Mol Cells. 2006 Feb 28;21(1):135-40</Citation><ArticleIdList><ArticleId 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Sud</li></country><settlement><li>Séoul</li></settlement><orgName><li>Université nationale de Séoul</li></orgName></list><tree><noCountry><name sortKey="Ahn, Jong Hwa" sort="Ahn, Jong Hwa" uniqKey="Ahn J" first="Jong Hwa" last="Ahn">Jong Hwa Ahn</name><name sortKey="Cho, Myeong Cheoul" sort="Cho, Myeong Cheoul" uniqKey="Cho M" first="Myeong-Cheoul" last="Cho">Myeong-Cheoul Cho</name><name sortKey="Choi, Doil" sort="Choi, Doil" uniqKey="Choi D" first="Doil" last="Choi">Doil Choi</name><name sortKey="Choi, Soon Ho" sort="Choi, Soon Ho" uniqKey="Choi S" first="Soon Ho" last="Choi">Soon Ho Choi</name><name sortKey="Han, Jung Heon" sort="Han, Jung Heon" uniqKey="Han J" first="Jung-Heon" last="Han">Jung-Heon Han</name><name sortKey="Her, Nam Han" sort="Her, Nam Han" uniqKey="Her N" first="Nam Han" last="Her">Nam Han Her</name><name sortKey="Kang, Byoung Cheorl" sort="Kang, Byoung Cheorl" uniqKey="Kang B" first="Byoung-Cheorl" last="Kang">Byoung-Cheorl Kang</name><name sortKey="Kim, Byung Dong" sort="Kim, Byung Dong" uniqKey="Kim B" first="Byung-Dong" last="Kim">Byung-Dong Kim</name><name sortKey="Kim, Jeong Ho" sort="Kim, Jeong Ho" uniqKey="Kim J" first="Jeong-Ho" last="Kim">Jeong-Ho Kim</name><name sortKey="Kim, Ki Taek" sort="Kim, Ki Taek" uniqKey="Kim K" first="Ki-Taek" last="Kim">Ki-Taek Kim</name><name sortKey="Kweon, Oh Yeol" sort="Kweon, Oh Yeol" uniqKey="Kweon O" first="Oh Yeol" last="Kweon">Oh Yeol Kweon</name><name sortKey="Kwon, Jin Kyung" sort="Kwon, Jin Kyung" uniqKey="Kwon J" first="Jin-Kyung" last="Kwon">Jin-Kyung Kwon</name><name sortKey="Lee, Heung Ryul" sort="Lee, Heung Ryul" uniqKey="Lee H" first="Heung-Ryul" last="Lee">Heung-Ryul Lee</name><name sortKey="Nahm, Seok Hyeon" sort="Nahm, Seok Hyeon" uniqKey="Nahm S" first="Seok-Hyeon" last="Nahm">Seok-Hyeon Nahm</name><name sortKey="Park, Minkyu" sort="Park, Minkyu" uniqKey="Park M" first="Minkyu" last="Park">Minkyu Park</name><name sortKey="Sung, Joo Hee" sort="Sung, Joo Hee" uniqKey="Sung J" first="Joo-Hee" last="Sung">Joo-Hee Sung</name><name sortKey="Yoon, Gi Bo" sort="Yoon, Gi Bo" uniqKey="Yoon G" first="Gi-Bo" last="Yoon">Gi-Bo Yoon</name></noCountry><country name="Corée du Sud"><noRegion><name sortKey="Kim, Hyoun Joung" sort="Kim, Hyoun Joung" uniqKey="Kim H" first="Hyoun-Joung" last="Kim">Hyoun-Joung Kim</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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